PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sphfalx0010s0076.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Bryophyta; Sphagnophytina; Sphagnopsida; Sphagnales; Sphagnaceae; Sphagnum
Family C3H
Protein Properties Length: 392aa    MW: 41043.3 Da    PI: 8.0507
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sphfalx0010s0076.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.61.6e-065577527
                          --SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH  5 lCrffartGtCkyGdrCkFaHgp 27
                          +Cr++     C+yG++C+F Hgp
  Sphfalx0010s0076.1.p 55 ECRRYNSPEGCPYGSKCRFKHGP 77
                          6999999999***********96 PP

2zf-CCCH17.66.7e-0693116225
                           -S---SGGGGTS--TTTTT-SS-S CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                           kt++C  f+ t  C+yG+ C+F H
  Sphfalx0010s0076.1.p  93 KTKPCTKFFSTSGCPYGEGCHFLH 116
                           9*********************** PP

3zf-CCCH29.41.3e-09177203127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC++f     C++GdrC+FaHg+
  Sphfalx0010s0076.1.p 177 FKTRLCNRFNTPEGCRFGDRCHFAHGE 203
                           79***********************96 PP

4zf-CCCH30.65.7e-10356380126
                           --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                           +kt+lC ++ + GtC + drC+FaHg
  Sphfalx0010s0076.1.p 356 FKTKLCENYIQ-GTCTFADRCHFAHG 380
                           69*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9725078IPR000571Zinc finger, CCCH-type
SMARTSM003560.625077IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-55379IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-45577IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-65680IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-791117IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.46591119IPR000571Zinc finger, CCCH-type
SMARTSM003560.6391118IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.8E-993116IPR000571Zinc finger, CCCH-type
PfamPF146082.499116No hitNo description
PROSITE profilePS5010314.399176204IPR000571Zinc finger, CCCH-type
SMARTSM003560.0031176203IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-8176207IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-14177207IPR000571Zinc finger, CCCH-type
PfamPF006427.4E-7177203IPR000571Zinc finger, CCCH-type
SuperFamilySSF547916.28E-13259332IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.101.3E-14260331IPR004088K Homology domain, type 1
SMARTSM003221.3E-11260330IPR004087K Homology domain
PROSITE profilePS5008415.2261325IPR004088K Homology domain, type 1
CDDcd001053.79E-13265326No hitNo description
PfamPF000136.5E-10266326IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.4E-14353386IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.83E-8354385IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.14355382IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-7355381IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-6356380IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGSYEPALKK ARPYEAGSTT LIAAMNGNGV AALNGGTTTA LDLQAMSMQL NGDQECRRYN  60
SPEGCPYGSK CRFKHGPTDD RDLGQPVSAL GSKTKPCTKF FSTSGCPYGE GCHFLHYVPG  120
GIAALGLMPV SASAGTTCLY SATSGGGGGR KGMGVTGVSA GLLACTTTDP ATTVGGFKTR  180
LCNRFNTPEG CRFGDRCHFA HGESDLRASN GISCLYSNGL EYMASAEGYM TGTLMTSPVA  240
SAIYYGEPTP PGVTATTFGA TTNTKIGIEA VFAGAIIGKA GANVKQISRL TGAKLSIREH  300
ETDINMRNVE MEGTYEQIER ASEMVHQFLQ QRTEVAPQRA AAAAAAAAAA LGSHNFKTKL  360
CENYIQGTCT FADRCHFAHG VHELRSTNLL R*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_001764219.11e-132predicted protein, partial
TrEMBLA9SCW41e-132A9SCW4_PHYPA; Predicted protein (Fragment)
STRINGPP1S66_196V6.11e-161(Physcomitrella patens)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-35C3H family protein